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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
pCHi-C
Assay category
6
DNA binding
Target of assay
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
2
March, 2020
Available data
3372
bam
3154
bigWig
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
6
cell line
2
in vitro differentiated cells
Organ
6
liver
2
blood vessel
2
epithelium
2
vasculature
vein
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
8
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
zippedFastqFolder
organ_slims!
vein
BIOSAMPLE
ASSAY
8 results
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Clear Filters
ChIP-seq
pCHi-C
cell line
HepG2
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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