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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
103
ATAC-seq
82
ChIP-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
1
FAIRE-seq
Assay category
330
DNA accessibility
82
DNA binding
52
Transcription
41
DNA methylation
Target of assay
52
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
10
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
67
November, 2017
64
August, 2021
19
September, 2020
15
August, 2017
10
October, 2019
9
November, 2018
November, 2020
Available data
3386
bam
3164
bigWig
1815
bed narrowPeak
1596
tsv
1358
fastq
1041
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
505
Homo sapiens
Biosample type
240
tissue
202
primary cell
62
cell line
1
in vitro differentiated cells
Organ
142
kidney
103
epithelium
87
pancreas
66
liver
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
18
vasculature
14
blood vessel
8
connective tissue
5
vein
4
artery
4
eye
2
adipose tissue
2
nerve
1
spleen
Project
352
AMP
153
HPAP
Genome assembly (visualization)
330
GRCh38
265
hg19
Lab
288
AMP-T2D consortium
153
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2020
BIOSAMPLE
ASSAY
505 results
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DNase-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
FAIRE-seq
tissue
kidney
13
64
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 39 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
1
+ See 21 more…
cell line
HepG2
61
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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