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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
2
DNase-seq
1
whole genome sequencing assay
Assay category
79
DNA binding
2
DNA accessibility
1
DNA sequencing
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
15
August, 2017
2
October, 2019
1
August, 2021
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
xls
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
82
Homo sapiens
Biosample type
59
cell line
22
primary cell
1
in vitro differentiated cells
Organ
59
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
81
hg19
63
GRCh38
Lab
81
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
bed bedMethyl
xls
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
58
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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