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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
17
DNase-seq
Assay category
79
DNA binding
77
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
134
May, 2022
64
November, 2017
19
September, 2020
15
August, 2017
9
November, 2018
7
October, 2019
1
November, 2020
Available data
3074
bam
2876
bigWig
1542
tsv
1535
bed narrowPeak
1358
fastq
809
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
133
bed broadPeak
96
bigBed broadPeak
84
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
249
Homo sapiens
Biosample type
178
primary cell
59
cell line
11
tissue
1
in vitro differentiated cells
Organ
88
epithelium
83
pancreas
61
liver
10
vasculature
8
blood vessel
8
brain
4
limb
4
vein
3
connective tissue
artery
2
nerve
1
adipose tissue
1
spleen
Project
153
HPAP
96
AMP
Genome assembly (visualization)
96
hg19
78
GRCh38
Lab
153
Klaus Kaestner, Upenn
96
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
+ See 5 more…
cell line
HepG2
58
Panc1
1
tissue
body of pancreas
2
brain
2
liver
2
tibial nerve
2
omental fat pad
1
+ See 2 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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