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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
65
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
266
DNA accessibility
65
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
55
November, 2017
19
September, 2020
10
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2928
bam
2675
bigWig
1600
tsv
1335
bed narrowPeak
1189
fastq
840
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
424
Homo sapiens
Biosample type
194
primary cell
176
tissue
53
cell line
1
in vitro differentiated cells
Organ
100
epithelium
87
pancreas
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
271
AMP
153
HPAP
Genome assembly (visualization)
254
GRCh38
248
hg19
Lab
271
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
424 results
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DNase-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
52
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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