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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 71ChIP-seq
Assay category
  • 206DNA accessibility
  • 71DNA binding
Target of assay
  • 47transcription factor
  • 24histone
  • 24histone modification
  • 14broad histone mark
  • 10narrow histone mark
  • 7RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 57November, 2017
  • 14August, 2017
  • 9November, 2018
  • 9October, 2019
  • 1November, 2020
Available data
  • 3286bam
  • 3068bigWig
  • 1726bed narrowPeak
  • 1600tsv
  • 1252fastq
  • 990bigBed narrowPeak
  • 397tagAlign
  • 313bed broadPeak
  • 277bigBed broadPeak
  • 261bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 277Homo sapiens
Biosample type
  • 176tissue
  • 56cell line
  • 44primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 60liver
  • 36limb
  • 34brain
  • 33musculature of body
  • 30heart
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 277AMP
Genome assembly (visualization)
  • 259GRCh38
  • 254hg19
Lab
  • 277AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

277 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG255
Panc11
primary cell
skeletal muscle myoblast112
endothelial cell of umbilical vein22
cardiac fibroblast3
brain microvascular endothelial cell11
choroid plexus epithelial cell11
in vitro differentiated cells
adipocyte1
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