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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 27ChIP-seq
Assay category
  • 205DNA accessibility
  • 27DNA binding
Target of assay
  • 15histone
  • 15histone modification
  • 12transcription factor
  • 8RNA binding protein
  • 8narrow histone mark
  • 7broad histone mark
  • 2chromatin remodeller
Date released
  • 187June, 2019
  • 20November, 2017
  • 9November, 2018
  • 9October, 2019
  • 6August, 2017
  • 1November, 2020
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 232Homo sapiens
Biosample type
  • 176tissue
  • 40primary cell
  • 15cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 19liver
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 232AMP
Genome assembly (visualization)
  • 224GRCh38
  • 209hg19
Lab
  • 232AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

232 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast5
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
cell line
HepG214
Panc11
in vitro differentiated cells
adipocyte1
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