Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
DNase-seq
73
ChIP-seq
Assay category
202
DNA accessibility
73
DNA binding
Target of assay
44
transcription factor
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
8
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
58
November, 2017
13
August, 2017
9
October, 2019
7
November, 2018
1
November, 2020
Available data
2832
bam
2687
bigWig
1534
bed narrowPeak
1437
tsv
798
bigBed narrowPeak
796
fastq
387
tagAlign
305
bed broadPeak
275
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
275
Homo sapiens
Biosample type
174
tissue
53
cell line
48
primary cell
Organ
78
kidney
56
liver
37
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
275
AMP
Genome assembly (visualization)
262
GRCh38
252
hg19
Lab
275
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
275 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
13
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
See all biosamples
Download