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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 79ChIP-seq
Assay category
  • 204DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9October, 2019
  • 7November, 2018
  • 1November, 2020
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1566tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 256bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 283Homo sapiens
Biosample type
  • 174tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 62liver
  • 37brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 283AMP
Genome assembly (visualization)
  • 265GRCh38
  • 260hg19
Lab
  • 283AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

283 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain13
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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