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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73ChIP-seq
  • 11DNase-seq
Assay category
  • 73DNA binding
  • 11DNA accessibility
Target of assay
  • 45transcription factor
  • 28histone
  • 28histone modification
  • 14broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 60November, 2017
  • 15August, 2017
  • 9November, 2018
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 84Homo sapiens
Biosample type
  • 54cell line
  • 20primary cell
  • 9tissue
  • 1in vitro differentiated cells
Organ
  • 57liver
  • 8brain
  • 4epithelium
  • 4vasculature
  • 2blood vessel
  • 2connective tissue
  • 2pancreas
  • 1adipose tissue
  • 1spleen
Project
  • 84AMP
Genome assembly (visualization)
  • 84hg19
  • 72GRCh38
Lab
  • 84AMP-T2D consortium
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

84 results

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ChIP-seq
DNase-seq
cell line
HepG254
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
tissue
body of pancreas2
brain2
liver2
omental fat pad1
right lobe of liver1
in vitro differentiated cells
adipocyte1
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