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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 2ChIP-seq
Assay category
  • 204DNA accessibility
  • 2DNA binding
Target of assay
  • 2broad histone mark
  • 2histone
  • 2histone modification
Date released
  • 187June, 2019
  • 9October, 2019
  • 8November, 2018
  • 1August, 2017
  • 1November, 2020
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 206Homo sapiens
Biosample type
  • 175tissue
  • 29primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 36limb
  • 33musculature of body
  • 31brain
  • 30heart
  • 18epithelium
  • 18ureter
  • 13vasculature
  • 11blood vessel
  • 9connective tissue
  • 7pancreas
  • 5liver
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 206AMP
Genome assembly (visualization)
  • 204GRCh38
  • 183hg19
Lab
  • 206AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

206 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain13
kidney13
muscle of leg13
primary cell
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
cell line
Panc11
in vitro differentiated cells
adipocyte1
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