Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 2DNase-seq
Assay category
  • 77DNA binding
  • 2DNA accessibility
Target of assay
  • 49transcription factor
  • 28histone
  • 28histone modification
  • 14broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 14August, 2017
  • 1November, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 79Homo sapiens
Biosample type
  • 58cell line
  • 20primary cell
  • 1tissue
Organ
  • 58liver
  • 7brain
  • 4epithelium
  • 4vasculature
  • 2blood vessel
Project
  • 79AMP
Genome assembly (visualization)
  • 79hg19
  • 63GRCh38
Lab
  • 79AMP-T2D consortium
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

79 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
tissue
brain1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego