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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
20
ChIP-seq
Assay category
183
DNA accessibility
20
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
chromatin remodeller
Date released
167
June, 2019
14
August, 2017
9
October, 2019
6
November, 2017
6
November, 2018
1
November, 2020
Available data
2680
bam
2516
bigWig
1426
tsv
1345
bed narrowPeak
880
fastq
655
bigBed narrowPeak
312
tagAlign
242
bed bed3+
240
bed broadPeak
203
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
203
Homo sapiens
Biosample type
155
tissue
46
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
203
AMP
Genome assembly (visualization)
199
GRCh38
180
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
liver
ureter
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
203 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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