Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
DNase-seq
66
ChIP-seq
Assay category
124
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
109
June, 2019
64
November, 2017
August, 2017
9
November, 2018
7
October, 2019
1
November, 2020
Available data
2924
bam
2735
bigWig
1482
tsv
1465
bed narrowPeak
1071
fastq
870
bigBed narrowPeak
313
tagAlign
201
bed broadPeak
190
bigBed broadPeak
160
bed bed3+
153
zippedFastqFolder
99
txt
26
bed bedMethyl
26
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
190
Homo sapiens
Biosample type
106
tissue
59
cell line
25
primary cell
Organ
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
nerve
1
spleen
Project
190
AMP
Genome assembly (visualization)
174
GRCh38
174
hg19
Lab
190
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
August, 2017
organ_slims!
kidney
nerve
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 29 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 9 more…
See all biosamples
Download