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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
3
ChIP-seq
Assay category
18
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
transcription factor
Date released
11
June, 2019
6
October, 2019
1
August, 2017
1
November, 2017
1
November, 2018
1
November, 2020
Available data
700
bam
645
bigWig
525
tsv
171
bed narrowPeak
97
bigBed narrowPeak
64
fastq
25
bed bed3+
24
tagAlign
22
bed broadPeak
21
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
tar
Organism
21
Homo sapiens
Biosample type
13
primary cell
7
tissue
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
19
liver
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
21
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
21 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
brain microvascular endothelial cell
1
1
brain pericyte
1
hepatic stellate cell
1
+ See 2 more…
tissue
coronary artery
2
omental fat pad
2
tibial artery
2
ascending aorta
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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