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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
13
DNase-seq
Assay category
73
DNA binding
13
DNA accessibility
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
1
November, 2020
1
October, 2019
Available data
2940
bam
2773
bigWig
1526
tsv
1442
bed narrowPeak
1352
fastq
724
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
123
bed broadPeak
86
bigBed broadPeak
78
bed bed3+
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
86
Homo sapiens
Biosample type
59
cell line
17
primary cell
9
tissue
1
in vitro differentiated cells
Organ
61
liver
vasculature
8
blood vessel
8
brain
8
epithelium
limb
4
vein
3
connective tissue
3
pancreas
2
artery
2
nerve
1
adipose tissue
1
spleen
Project
86
AMP
Genome assembly (visualization)
86
hg19
70
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
month_released!!
June, 2019
organ_slims!
limb
vasculature
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
osteoblast
1
tissue
body of pancreas
2
brain
2
liver
2
omental fat pad
1
right lobe of liver
1
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in vitro differentiated cells
adipocyte
1
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