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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 19DNase-seq
Assay category
  • 79DNA binding
  • 19DNA accessibility
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9November, 2018
  • 9October, 2019
  • 1November, 2020
Available data
  • 3174bam
  • 2959bigWig
  • 1607bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 832bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 135bed broadPeak
  • 98bigBed broadPeak
  • 86bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 98Homo sapiens
Biosample type
  • 59cell line
  • 25primary cell
  • 13tissue
  • 1in vitro differentiated cells
Organ
  • 61liver
  • 10vasculature
  • 8blood vessel
  • 8brain
  • 8epithelium
  • 4limb
  • 4vein
  • 3connective tissue
  • 3pancreas
  • 2artery
  • 2nerve
  • 1adipose tissue
  • 1spleen
Project
  • 98AMP
Genome assembly (visualization)
  • 98hg19
  • 80GRCh38
Lab
  • 98AMP-T2D consortium
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

98 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein22
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
tissue
body of pancreas2
brain2
liver2
tibial artery2
tibial nerve2
in vitro differentiated cells
adipocyte1
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