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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
DNase-seq
8
ChIP-seq
Assay category
39
DNA accessibility
8
DNA binding
Target of assay
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
3
transcription factor
2
broad histone mark
Date released
35
June, 2019
6
November, 2017
6
October, 2019
November, 2018
Available data
454
bam
395
bigWig
342
bed narrowPeak
202
bigBed narrowPeak
124
tagAlign
108
tsv
56
bed broadPeak
47
bigBed broadPeak
46
bed bed3+
46
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
47
Homo sapiens
Biosample type
30
tissue
17
primary cell
Organ
78
kidney
60
liver
36
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
nerve
1
adipose tissue
0
embryo
Project
47
AMP
Genome assembly (visualization)
45
GRCh38
36
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ChIP-seq
tissue
brain
12
coronary artery
2
frontal cortex
2
tibial artery
2
Ammon's horn
1
+ See 11 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
+ See 3 more…
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