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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197DNase-seq
  • 79ChIP-seq
Assay category
  • 197DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 64November, 2017
  • 15August, 2017
  • November, 2018
  • 9October, 2019
  • 1November, 2020
Available data
  • 3305bam
  • 3089bigWig
  • 1744bed narrowPeak
  • 1600tsv
  • 1270fastq
  • 969bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 29bed bedMethyl
  • 29bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 7csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 276Homo sapiens
Biosample type
  • 167tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 60liver
  • 36brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 8connective tissue
  • 5pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2nerve
  • 1adipose tissue
Project
  • 276AMP
Genome assembly (visualization)
  • 258GRCh38
  • 253hg19
Lab
  • 276AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

276 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
brain12
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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