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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199DNase-seq
  • 77ChIP-seq
Assay category
  • 199DNA accessibility
  • 77DNA binding
Target of assay
  • 49transcription factor
  • 28histone
  • 28histone modification
  • 14broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9November, 2018
  • October, 2019
  • 1November, 2020
Available data
  • 3142bam
  • 2962bigWig
  • 1628bed narrowPeak
  • 1584tsv
  • 1358fastq
  • 972bigBed narrowPeak
  • 349tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 265bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 276Homo sapiens
Biosample type
  • 172tissue
  • 58cell line
  • 45primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 33musculature of body
  • 32limb
  • 30heart
  • 18epithelium
  • 18ureter
  • 11vasculature
  • 9connective tissue
  • 7blood vessel
  • 6pancreas
  • 4eye
  • 2adipose tissue
  • 2artery
  • 1spleen
Project
  • 276AMP
Genome assembly (visualization)
  • 260GRCh38
  • 253hg19
Lab
  • 276AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

276 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG258
primary cell
skeletal muscle myoblast113
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
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