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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
59
ChIP-seq
Assay category
193
DNA accessibility
59
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
179
June, 2019
52
November, 2017
9
August, 2017
8
November, 2018
3
October, 2019
1
November, 2020
Available data
2432
bam
2205
bigWig
1292
bed narrowPeak
1190
fastq
1131
tsv
748
bigBed narrowPeak
268
bed broadPeak
252
bigBed broadPeak
242
bed bed3+
241
tagAlign
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
252
Homo sapiens
Biosample type
169
tissue
51
cell line
31
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
adipose tissue
2
nerve
2
vein
1
spleen
Project
252
AMP
Genome assembly (visualization)
237
GRCh38
230
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
organ_slims!
adipose tissue
vasculature
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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