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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 202DNase-seq
  • 79ChIP-seq
Assay category
  • 202DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 185June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9November, 2018
  • 7October, 2019
  • 1November, 2020
Available data
  • 3290bam
  • 3084bigWig
  • 1743bed narrowPeak
  • 1543tsv
  • 1358fastq
  • 1017bigBed narrowPeak
  • 392tagAlign
  • 318bed broadPeak
  • 281bigBed broadPeak
  • 270bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 281Homo sapiens
Biosample type
  • 172tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 281AMP
Genome assembly (visualization)
  • 263GRCh38
  • 258hg19
Lab
  • 281AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • artery
BIOSAMPLE
ASSAY

281 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
body of pancreas4
left renal cortex interstitium4
left renal pelvis4
right renal pelvis4
heart left ventricle3
retina3
right renal cortex interstitium3
frontal cortex2
liver2
omental fat pad2
pancreas2
right atrium auricular region2
tibial nerve2
Ammon's horn1
ascending aorta1
caudate nucleus1
cerebellar cortex1
cerebellum (Hemisphere)1
forelimb muscle1
globus pallidus1
heart right ventricle1
hindlimb muscle1
inferior parietal cortex1
left cardiac atrium1
medulla oblongata1
midbrain1
middle frontal gyrus1
occipital lobe1
pons1
putamen1
right lobe of liver1
spleen1
superior temporal gyrus1
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the hippocampus1
brain pericyte1
cardiac muscle cell1
epithelial cell of proximal tubule1
glomerular endothelial cell1
hepatic stellate cell1
hepatocyte1
kidney capillary endothelial cell1
kidney epithelial cell1
kidney glomerular epithelial cell1
osteoblast1
renal cortical epithelial cell1
retinal pigment epithelial cell1
skeletal muscle cell1
smooth muscle cell of the brain vasculature1
in vitro differentiated cells
adipocyte1
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