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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197DNase-seq
  • 75ChIP-seq
Assay category
  • 197DNA accessibility
  • 75DNA binding
Target of assay
  • 48transcription factor
  • 27histone
  • 27histone modification
  • 14broad histone mark
  • 13narrow histone mark
  • 8RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 182June, 2019
  • 62November, 2017
  • 15August, 2017
  • 9November, 2018
  • 3October, 2019
  • 1November, 2020
Available data
  • 3212bam
  • 3019bigWig
  • 1688bed narrowPeak
  • 1533tsv
  • 1355fastq
  • 963bigBed narrowPeak
  • 392tagAlign
  • 309bed broadPeak
  • 272bigBed broadPeak
  • 263bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3cool
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 272Homo sapiens
Biosample type
  • 171tissue
  • 59cell line
  • 41primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 272AMP
Genome assembly (visualization)
  • 256GRCh38
  • 250hg19
Lab
  • 272AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

272 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
astrocyte of the cerebellum12
cardiac fibroblast3
choroid plexus epithelial cell12
glomerular visceral epithelial cell2
in vitro differentiated cells
adipocyte1
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