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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 174DNase-seq
  • 73ChIP-seq
Assay category
  • 174DNA accessibility
  • 73DNA binding
Target of assay
  • 46transcription factor
  • 27histone
  • 27histone modification
  • 16broad histone mark
  • 11narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 157June, 2019
  • 58November, 2017
  • 15August, 2017
  • 9October, 2019
  • 7November, 2018
  • 1November, 2020
Available data
  • 3149bam
  • 2947bigWig
  • 1614bed narrowPeak
  • 1574tsv
  • 1337fastq
  • 915bigBed narrowPeak
  • 280tagAlign
  • 275bed broadPeak
  • 247bigBed broadPeak
  • 238bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2hdf5
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 247Homo sapiens
Biosample type
  • 149tissue
  • 59cell line
  • 38primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 247AMP
Genome assembly (visualization)
  • 234hg19
  • 229GRCh38
Lab
  • 247AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • brain
BIOSAMPLE
ASSAY

247 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
renal cortex interstitium11
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
in vitro differentiated cells
adipocyte1
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