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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197DNase-seq
  • 79ChIP-seq
Assay category
  • 197DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 181June, 2019
  • 64November, 2017
  • 14August, 2017
  • 9October, 2019
  • 8November, 2018
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1122tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 246bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 276Homo sapiens
Biosample type
  • 174tissue
  • 59cell line
  • 43primary cell
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 276AMP
Genome assembly (visualization)
  • 258GRCh38
  • 254hg19
Lab
  • 276AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

276 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
choroid plexus epithelial cell12
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