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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
66
ChIP-seq
Assay category
191
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
176
June, 2019
55
November, 2017
13
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
3103
bam
2908
bigWig
1552
bed narrowPeak
1527
tsv
1265
fastq
866
bigBed narrowPeak
392
tagAlign
294
bed broadPeak
257
bigBed broadPeak
254
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
257
Homo sapiens
Biosample type
168
tissue
55
cell line
33
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
257
AMP
Genome assembly (visualization)
243
GRCh38
235
hg19
Lab
257
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
vasculature
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
257 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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