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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 201DNase-seq
  • 21ChIP-seq
Assay category
  • 201DNA accessibility
  • 21DNA binding
Target of assay
  • 16histone
  • 16histone modification
  • 8broad histone mark
  • 8narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 185June, 2019
  • 15August, 2017
  • 9October, 2019
  • 6November, 2017
  • 6November, 2018
  • 1November, 2020
Available data
  • 2711bam
  • 2547bigWig
  • 1426tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 260bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 222Homo sapiens
Biosample type
  • 173tissue
  • 47primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 222AMP
Genome assembly (visualization)
  • 218GRCh38
  • 199hg19
Lab
  • 222AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 1inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

222 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
cell line
Panc11
in vitro differentiated cells
adipocyte1
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