Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
DNase-seq
8
ChIP-seq
Assay category
46
DNA accessibility
8
DNA binding
Target of assay
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
3
transcription factor
2
broad histone mark
Date released
42
June, 2019
6
November, 2017
4
October, 2019
2
November, 2018
Available data
552
bam
514
bigWig
348
bed narrowPeak
272
fastq
197
bigBed narrowPeak
182
tsv
125
tagAlign
80
zippedFastqFolder
63
bed broadPeak
54
bigBed broadPeak
53
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
54
Homo sapiens
Biosample type
27
primary cell
27
tissue
Organ
78
kidney
63
liver
38
brain
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
54
AMP
Genome assembly (visualization)
52
GRCh38
38
hg19
Lab
54
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
54 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 11 more…
tissue
brain
14
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 8 more…
See all biosamples
Download