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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
16
DNase-seq
Assay category
46
DNA binding
16
DNA accessibility
Target of assay
46
transcription factor
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
46
November, 2017
9
June, 2019
4
October, 2019
3
November, 2018
Available data
740
bam
644
bigWig
440
fastq
431
bed narrowPeak
340
bigBed narrowPeak
256
tsv
62
bed broadPeak
62
bigBed broadPeak
34
tagAlign
23
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
62
Homo sapiens
Biosample type
44
cell line
10
primary cell
8
tissue
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
0
embryo
Project
62
AMP
Genome assembly (visualization)
61
hg19
50
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
primary cell
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
hepatic stellate cell
1
hepatocyte
1
+ See 2 more…
tissue
coronary artery
2
liver
2
tibial artery
2
ascending aorta
1
right lobe of liver
1
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