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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 58ChIP-seq
  • 5DNase-seq
Assay category
  • 58DNA binding
  • 5DNA accessibility
Target of assay
  • 44transcription factor
  • 14histone
  • 14histone modification
  • 8broad histone mark
  • 6narrow histone mark
  • 4RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 58November, 2017
  • 3November, 2018
  • 2June, 2019
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 63Homo sapiens
Biosample type
  • 58cell line
  • 3tissue
  • 2primary cell
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 63AMP
Genome assembly (visualization)
  • 63hg19
  • 49GRCh38
Lab
  • 63AMP-T2D consortium
Audit category:
  • 13inconsistent control read length
BIOSAMPLE
ASSAY

63 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
tissue
liver2
right lobe of liver1
primary cell
hepatic stellate cell1
hepatocyte1
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