Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182DNase-seq
  • 79ChIP-seq
Assay category
  • 182DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 164June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9October, 2019
  • 8November, 2018
  • 1November, 2020
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 261Homo sapiens
Biosample type
  • 155tissue
  • 59cell line
  • 46primary cell
  • 1in vitro differentiated cells
Organ
  • 73kidney
  • 62liver
  • 36limb
  • 33musculature of body
  • 29brain
  • 23heart
  • 20epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 8connective tissue
  • 7pancreas
  • 4artery
  • 4vein
  • 2adipose tissue
  • 2eye
  • 2nerve
  • 1spleen
Project
  • 261AMP
Genome assembly (visualization)
  • 248hg19
  • 243GRCh38
Lab
  • 261AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

261 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm17
heart14
muscle of leg13
brain12
kidney11
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego