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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
44
DNase-seq
Assay category
79
DNA binding
44
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
39
June, 2019
15
August, 2017
4
October, 2019
1
November, 2018
Available data
1159
bam
1078
bigWig
728
bed narrowPeak
630
fastq
529
bigBed narrowPeak
371
tsv
142
tagAlign
125
bed broadPeak
123
bigBed broadPeak
107
bed bed3+
20
bed bedMethyl
20
bigBed bedMethyl
13
bedpe bed3+
12
hic
8
txt
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
123
Homo sapiens
Biosample type
59
cell line
41
primary cell
22
tissue
1
in vitro differentiated cells
Organ
59
liver
20
brain
18
epithelium
11
kidney
10
vasculature
9
heart
6
blood vessel
4
connective tissue
3
eye
3
vein
1
pancreas
Project
123
AMP
Genome assembly (visualization)
110
hg19
105
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
replication_type!
unreplicated
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
+ See 12 more…
tissue
heart
4
brain
2
frontal cortex
2
kidney
2
retina
2
+ See 10 more…
in vitro differentiated cells
adipocyte
1
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