Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 30ChIP-seq
Assay category
  • 206DNA accessibility
  • 30DNA binding
Target of assay
  • transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 17November, 2017
  • 13August, 2017
  • 9November, 2018
  • 9October, 2019
  • 1November, 2020
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 176tissue
  • 44primary cell
  • 15cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 33musculature of body
  • 30heart
  • 20epithelium
  • 19liver
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 236AMP
Genome assembly (visualization)
  • 231GRCh38
  • 213hg19
Lab
  • 236AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

236 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast111
endothelial cell of umbilical vein22
cardiac fibroblast3
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cell line
HepG214
Panc11
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego