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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 801ChIP-seq
  • 27ATAC-seq
  • 5DNase-seq
  • 5FAIRE-seq
Assay category
  • 801DNA binding
  • 37DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 97May, 2019
  • 64April, 2019
  • 64November, 2018
  • 63October, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 23June, 2019
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 832Homo sapiens
Biosample type
  • 385tissue
  • 354cell line
  • 82primary cell
  • 17in vitro differentiated cells
Organ
  • 353liver
  • 95brain
  • 84pancreas
  • 72vasculature
  • 70blood vessel
  • 64heart
  • 60epithelium
  • 54blood
  • 54bodily fluid
  • 48limb
  • 26kidney
  • 24nerve
  • 21artery
  • 20connective tissue
  • 14musculature of body
  • 12spleen
  • 11vein
  • 8adipose tissue
  • 2eye
Project
  • 838AMP
Genome assembly (visualization)
  • 794GRCh38
  • 782hg19
Lab
  • 838AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 20inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

838 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver38
heart left ventricle28
body of pancreas26
tibial nerve24
kidney181
cell line
HepG2293
GM1287854
Panc16
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein101
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte21
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