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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
1
ATAC-seq
Assay category
249
DNA binding
1
DNA accessibility
Target of assay
274
transcription factor
81
recombinant protein
RNA binding protein
23
histone
23
histone modification
19
chromatin remodeller
14
broad histone mark
9
narrow histone mark
1
other context
1
other post-translational modification
Date released
169
November, 2017
46
December, 2017
29
November, 2018
6
August, 2017
Available data
624
bam
566
bigWig
408
fastq
385
bed narrowPeak
303
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
250
Homo sapiens
Biosample type
194
cell line
44
tissue
12
in vitro differentiated cells
Organ
250
liver
81
brain
72
pancreas
65
blood vessel
65
vasculature
58
heart
51
epithelium
48
limb
44
blood
44
bodily fluid
24
kidney
24
nerve
20
artery
14
musculature of body
13
connective tissue
12
spleen
11
vein
3
adipose tissue
1
eye
Project
250
AMP
Genome assembly (visualization)
247
hg19
229
GRCh38
Lab
250
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
5
inconsistent control run_type
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
ATAC-seq
cell line
HepG2
194
tissue
liver
37
right lobe of liver
6
1
in vitro differentiated cells
hepatocyte
12
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