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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 716ChIP-seq
  • 27ATAC-seq
  • 5FAIRE-seq
  • 3DNase-seq
Assay category
  • 716DNA binding
  • 35DNA accessibility
Target of assay
  • 360transcription factor
  • 351histone
  • 351histone modification
  • 221broad histone mark
  • 130narrow histone mark
  • 84RNA binding protein
  • 81recombinant protein
  • 29chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 249November, 2017
  • 97May, 2019
  • 64April, 2019
  • 64November, 2018
  • 63October, 2019
  • 50December, 2017
  • 45October, 2018
  • 30December, 2018
  • 23June, 2019
  • 21August, 2017
  • 21January, 2019
  • 14September, 2018
  • 5September, 2017
  • 3October, 2017
  • 2July, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 751Homo sapiens
Biosample type
  • 371tissue
  • 302cell line
  • 62primary cell
  • 16in vitro differentiated cells
Organ
  • 301liver
  • 81brain
  • 78pancreas
  • 68blood vessel
  • 68vasculature
  • 64heart
  • 56epithelium
  • 54blood
  • 54bodily fluid
  • 48limb
  • 26kidney
  • 24nerve
  • 21artery
  • 19connective tissue
  • 14musculature of body
  • 12spleen
  • 11vein
  • 8adipose tissue
  • 2eye
Project
  • 751AMP
Genome assembly (visualization)
  • 717GRCh38
  • 695hg19
Lab
  • 751AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 20inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

751 results

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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver38
heart left ventricle28
body of pancreas26
tibial nerve24
kidney181
cell line
HepG2241
GM1287854
Panc16
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein101
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
pancreatic alpha cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
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