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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
21
ChIP-seq
20
DNase-seq
1
FAIRE-seq
Assay category
43
DNA accessibility
21
DNA binding
Target of assay
29
histone
29
histone modification
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
19
June, 2019
14
September, 2018
9
December, 2017
9
October, 2019
5
September, 2017
3
August, 2017
3
May, 2019
2
November, 2017
Available data
271
bam
256
bigWig
229
fastq
159
tsv
121
bed narrowPeak
80
zippedFastqFolder
64
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
6
bed bedMethyl
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
64
Homo sapiens
Biosample type
51
primary cell
9
in vitro differentiated cells
3
tissue
1
cell line
Organ
344
liver
94
brain
94
kidney
72
heart
72
pancreas
70
limb
61
epithelium
58
vasculature
55
blood vessel
53
blood
53
bodily fluid
41
musculature of body
23
connective tissue
19
artery
18
nerve
18
ureter
11
spleen
9
adipose tissue
8
vein
5
eye
Project
64
AMP
Genome assembly (visualization)
63
GRCh38
58
hg19
Lab
64
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed bedMethyl
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
5
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
kidney epithelial cell
3
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
9
tissue
retina
3
cell line
glomerular visceral epithelial cell
1
See all biosamples
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