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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
22
ATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
40
DNA binding
36
DNA accessibility
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
October, 2018
27
October, 2019
17
August, 2017
14
September, 2018
6
June, 2019
5
September, 2017
4
May, 2019
3
November, 2018
Available data
738
bam
666
bigWig
473
tsv
434
fastq
248
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
33
bed bed3+
25
bed broadPeak
25
tagAlign
11
bigBed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
cool
1
bedpe
1
hdf5
Organism
70
Homo sapiens
Biosample type
47
tissue
22
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
51
pancreas
47
musculature of body
26
nerve
25
artery
23
connective tissue
18
ureter
13
spleen
13
vein
6
eye
5
adipose tissue
Project
76
AMP
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
76
AMP-T2D consortium
Audit category:
4
inconsistent control read length
1
inconsistent assembly
files.file_type!
cool
month_released!
October, 2018
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
tibial artery
18
2
pancreas
12
2
1
body of pancreas
1
4
coronary artery
3
2
islet of Langerhans
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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