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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
17
DNase-seq
1
FAIRE-seq
Assay category
18
DNA accessibility
18
DNA binding
Target of assay
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
18
June, 2019
14
October, 2019
4
May, 2019
Available data
317
bam
301
bigWig
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
36
Homo sapiens
Biosample type
35
primary cell
1
cell line
Organ
113
brain
104
kidney
94
heart
84
limb
79
vasculature
77
blood vessel
47
musculature of body
36
epithelium
26
nerve
26
pancreas
25
artery
19
connective tissue
18
ureter
13
vein
6
eye
2
adipose tissue
2
liver
Project
36
AMP
Genome assembly (visualization)
35
GRCh38
30
hg19
Lab
36
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
kidney epithelial cell
4
1
epithelial cell of proximal tubule
2
1
retinal pigment epithelial cell
2
1
glomerular visceral epithelial cell
2
+ See 8 more…
cell line
glomerular visceral epithelial cell
1
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