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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 313ChIP-seq
  • 197DNase-seq
  • 3ATAC-seq
  • 3FAIRE-seq
Assay category
  • 313DNA binding
  • 203DNA accessibility
Target of assay
  • 299histone
  • 299histone modification
  • 187broad histone mark
  • 112narrow histone mark
  • 14transcription factor
  • 12RNA binding protein
Date released
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 57November, 2017
  • 14October, 2018
  • 2July, 2019
  • 1August, 2017
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 516Homo sapiens
Biosample type
  • 440tissue
  • 66primary cell
  • 8cell line
  • 2in vitro differentiated cells
Organ
  • 113brain
  • 104kidney
  • 94heart
  • 84limb
  • 79vasculature
  • 77blood vessel
  • 47musculature of body
  • 36epithelium
  • 26nerve
  • 26pancreas
  • 25artery
  • 19connective tissue
  • 18ureter
  • 13vein
  • 6eye
  • 2adipose tissue
  • 2liver
Project
  • 516AMP
Genome assembly (visualization)
  • 508GRCh38
  • 441hg19
Lab
  • 516AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

516 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
tibial nerve242
heart718
tibial artery182
primary cell
endothelial cell of umbilical vein1021
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
kidney epithelial cell41
cell line
Panc161
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte2
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