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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
11
DNase-seq
1
FAIRE-seq
Assay category
30
DNA binding
12
DNA accessibility
Target of assay
66
histone
66
histone modification
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
17
May, 2019
14
October, 2019
7
June, 2019
4
November, 2017
Available data
140
bam
112
bigWig
92
bed narrowPeak
68
tsv
42
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hdf5
1
tar
Organism
42
Homo sapiens
Biosample type
26
tissue
16
primary cell
Organ
337
liver
92
kidney
69
brain
62
epithelium
61
pancreas
60
heart
54
blood
54
bodily fluid
50
limb
42
vasculature
39
musculature of body
38
blood vessel
24
connective tissue
18
ureter
11
artery
10
adipose tissue
10
nerve
9
spleen
8
vein
6
eye
Project
42
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hdf5
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
ascending aorta
5
1
tibial artery
4
2
coronary artery
3
2
thoracic aorta
5
aorta
4
primary cell
endothelial cell of umbilical vein
5
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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