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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
DNase-seq
22
ATAC-seq
13
ChIP-seq
2
FAIRE-seq
Assay category
50
DNA accessibility
13
DNA binding
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
Date released
October, 2018
22
June, 2019
14
September, 2018
11
August, 2017
7
October, 2019
5
September, 2017
3
November, 2018
1
May, 2019
Available data
654
bam
599
bigWig
434
fastq
415
tsv
192
bed narrowPeak
80
zippedFastqFolder
69
bigBed narrowPeak
47
bed bed3+
39
bed broadPeak
25
bigBed broadPeak
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
63
Homo sapiens
Biosample type
34
tissue
22
primary cell
7
cell line
Organ
349
liver
104
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
76
brain
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
45
pancreas
26
nerve
25
artery
23
connective tissue
18
ureter
13
spleen
13
vein
6
eye
5
adipose tissue
Project
63
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
63
AMP-T2D consortium
Audit category:
4
inconsistent control read length
files.file_type!
tagAlign
month_released!
October, 2018
BIOSAMPLE
ASSAY
63 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
tissue
renal pelvis
10
pancreas
2
6
1
body of pancreas
4
1
left renal pelvis
4
right renal pelvis
4
+ See 1 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
1
6
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