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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
373
ChIP-seq
9
DNase-seq
1
ATAC-seq
Assay category
373
DNA binding
10
DNA accessibility
Target of assay
315
transcription factor
81
recombinant protein
56
RNA binding protein
55
histone
55
histone modification
35
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
20
October, 2019
6
August, 2017
4
June, 2019
3
May, 2019
Available data
783
bam
707
bigWig
515
bed narrowPeak
465
fastq
383
bigBed narrowPeak
tsv
92
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
383
Homo sapiens
Biosample type
293
cell line
74
tissue
14
in vitro differentiated cells
2
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
383
AMP
Genome assembly (visualization)
379
hg19
351
GRCh38
Lab
383
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
month_released!
February, 2020
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
tibial artery
18
2
right lobe of liver
7
1
1
coronary artery
3
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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