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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
61
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
34
transcription factor
27
histone
27
histone modification
14
narrow histone mark
12
broad histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
450
February, 2021
65
August, 2017
17
July, 2019
15
June, 2019
5
November, 2020
5
October, 2018
3
October, 2019
2
April, 2018
2
August, 2021
2
July, 2018
1
January, 2018
1
May, 2021
1
November, 2018
1
October, 2017
Available data
72
fastq
71
bam
65
bigWig
46
bed narrowPeak
22
tagAlign
11
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
65
Homo sapiens
Biosample type
48
in vitro differentiated cells
17
tissue
Organ
159
pancreas
65
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
65
AMP
Genome assembly (visualization)
64
GRCh38
63
hg19
Lab
65
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
47
1
tissue
white adipose tissue
12
adipose tissue
1
2
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
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