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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
196
DNase-seq
23
ATAC-seq
7
single cell RNA-seq
4
FAIRE-seq
Assay category
391
DNA binding
223
DNA accessibility
7
Transcription
Target of assay
298
histone
298
histone modification
183
broad histone mark
115
narrow histone mark
91
transcription factor
38
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
208
June, 2019
97
May, 2019
October, 2019
64
April, 2019
63
November, 2017
45
October, 2018
36
August, 2017
30
December, 2018
23
November, 2018
21
January, 2019
15
September, 2018
6
October, 2017
5
February, 2021
5
September, 2017
2
July, 2019
1
November, 2020
Available data
2468
bam
2341
bigWig
1411
tsv
1189
bed narrowPeak
893
fastq
614
bigBed narrowPeak
263
tagAlign
250
bed bed3+
250
bed broadPeak
213
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
csv
4
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
Organism
615
Homo sapiens
Biosample type
470
tissue
96
primary cell
54
cell line
1
in vitro differentiated cells
Organ
liver
127
brain
108
kidney
94
heart
84
pancreas
62
epithelium
54
blood
54
bodily fluid
50
vasculature
47
musculature of body
46
blood vessel
38
limb
25
connective tissue
18
ureter
13
spleen
9
adipose tissue
6
eye
5
artery
Project
621
AMP
Genome assembly (visualization)
606
GRCh38
539
hg19
Lab
621
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
5
audit script error
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
621 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
kidney
18
13
5
1
heart left ventricle
28
3
body of pancreas
26
4
heart
7
18
brain
6
14
+ See 49 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 22 more…
cell line
GM12878
54
in vitro differentiated cells
adipocyte
1
See all biosamples
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