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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
352
November, 2017
236
August, 2017
199
June, 2019
88
November, 2018
78
December, 2017
76
February, 2023
63
May, 2019
63
October, 2018
58
September, 2018
50
July, 2018
50
October, 2019
45
February, 2021
44
April, 2018
42
April, 2019
41
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
May, 2022
16
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
2
July, 2019
1
March, 2019
1
November, 2020
Available data
88
fastq
87
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
88
Homo sapiens
Biosample type
61
cell line
26
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
88
AMP
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
88
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2022
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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