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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
92
DNA binding
33
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
1
October, 2019
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
18
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
125
Homo sapiens
Biosample type
117
tissue
8
primary cell
Organ
303
liver
125
brain
102
kidney
88
heart
85
pancreas
84
limb
78
vasculature
75
blood vessel
69
epithelium
47
musculature of body
44
blood
44
bodily fluid
26
nerve
24
artery
22
connective tissue
18
ureter
13
spleen
13
vein
5
adipose tissue
5
eye
Project
125
AMP
Genome assembly (visualization)
124
GRCh38
63
hg19
Lab
125
AMP-T2D consortium
Audit category:
3
missing controlled_by
files.file_type!
bed bedMethyl
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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