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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
32
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
32
DNA binding
10
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
12
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
559
February, 2021
312
November, 2017
210
June, 2019
189
May, 2020
173
May, 2021
164
July, 2018
131
August, 2017
123
August, 2021
97
May, 2019
86
October, 2019
73
November, 2018
67
July, 2019
64
April, 2019
50
December, 2017
49
April, 2018
47
October, 2018
45
March, 2020
40
September, 2018
30
December, 2018
January, 2019
25
February, 2020
20
November, 2019
16
February, 2023
15
February, 2018
9
December, 2019
6
October, 2017
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
111
tissue
19
primary cell
1
in vitro differentiated cells
Organ
106
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
131
AMP
Genome assembly (visualization)
131
hg19
127
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
1
1
pancreas
12
liver
5
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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