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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
32
ChIP-seq
8
single cell RNA-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
57
Transcription
32
DNA binding
10
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
12
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
89
February, 2021
November, 2018
70
October, 2019
64
April, 2019
57
August, 2021
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
7
February, 2023
7
May, 2022
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
1
October, 2022
Available data
331
bam
319
bigWig
287
fastq
248
bed narrowPeak
212
tsv
109
tagAlign
64
xls
57
txt
42
bigBed narrowPeak
41
bed broadPeak
38
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
vcf
Organism
93
Homo sapiens
Biosample type
79
tissue
19
primary cell
1
in vitro differentiated cells
Organ
57
kidney
17
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
99
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
57
Katalin Susztak, Upenn
42
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
99 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
49
8
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
+ See 2 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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