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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 750ChIP-seq
  • 208DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 750DNA binding
  • 240DNA accessibility
Target of assay
  • 384histone
  • 384histone modification
  • 361transcription factor
  • 240broad histone mark
  • 144narrow histone mark
  • 85RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 264November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 44October, 2018
  • 39August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3286bam
  • 3068bigWig
  • 1726bed narrowPeak
  • 1600tsv
  • 1252fastq
  • 990bigBed narrowPeak
  • 397tagAlign
  • 313bed broadPeak
  • 277bigBed broadPeak
  • 261bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 985Homo sapiens
Biosample type
  • 558tissue
  • 311cell line
  • 104primary cell
  • 17in vitro differentiated cells
Organ
  • 314liver
  • 123brain
  • 104kidney
  • 94heart
  • 88pancreas
  • 84limb
  • 81vasculature
  • 78blood vessel
  • 74epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 990AMP
Genome assembly (visualization)
  • 967GRCh38
  • 911hg19
Lab
  • 990AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 10missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

990 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2249
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast132
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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